PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.259300.1
Common NameCsa_3G119500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 620aa    MW: 68551.9 Da    PI: 5.9419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.259300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13448494455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Cucsa.259300.1 448 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 494
                     799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-5552240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-14447498No hitNo description
SuperFamilySSF474593.53E-18447507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-18448506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10448494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-17450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKIEDGLRSV GGKDEDKTVV AAVLGTRAFN YLMSCSVSNE NLFMAVRNDE NLQNKLSDLV  60
ERPNASNFSW NYAIFWQLSH SKSGEWVLGW GDGSCRDPRD GDETEATQIL SLQLEDESQQ  120
RMKKRALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCLASGKH  180
IWNLDVLNSP SEYCVRSYLA KSAGIQTVVL VPTDVGVVEL GSVRSVNESL ELVQLIRSLF  240
SSQLSLDRVR SSAAMSMIAE RKDESTSFAS WGIAERGEGG GGIPKVFGQT LNSGNMGRSH  300
FREKLAIRKM DERSWEACAN GGRIQFQSPR NGIRSPSLAH VHGLKQGNHS PAEIYVSPTP  360
PVNNNHEQLV SGVRDEFGLN PYQSQKLAQM QIDFSVATSR PSVINRVGAD SEHSDVEPQC  420
KEEGPGTDER RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  480
SLLGDAIAYI NELQEKVKVM EFEREKSSLT SSEATPSEGN PEIETKDQFL DVDIDVEAAH  540
DEVIVKVSCP LESHPASRVI KAMRDAQINV IDSKLSEAND KVLHTFVIKS PGSEQLTKEK  600
LIAAFSQDST SLHPLPTVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-22482415193Transcription factor MYC3
4rqw_B4e-22482415193Transcription factor MYC3
4rs9_A4e-22482415193Transcription factor MYC3
4yz6_A4e-22482415193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429437RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437879.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0A0L7480.0A0A0A0L748_CUCSA; Uncharacterized protein
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]